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        "ref",
        "method",
        "min.len",
        "max.len",
        "int",
        "slope",
        "quad",
        "source",
        "comment"
      ],
      "rows": 257,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "addZeroCatch",
      "title": "Adds zeros for catches of species not collected in some sampling events.",
      "topics": [
        "addZeroCatch"
      ]
    },
    {
      "page": "ageBias",
      "title": "Compute and view possible differences between paired sets of ages.",
      "topics": [
        "ageBias",
        "plot.ageBias",
        "summary.ageBias"
      ]
    },
    {
      "page": "agePrecision",
      "title": "Compute measures of precision among sets of ages.",
      "topics": [
        "agePrecision",
        "plot.agePrec",
        "summary.agePrec"
      ]
    },
    {
      "page": "alkAgeDist",
      "title": "Proportions-at-age from an age-length key",
      "topics": [
        "alkAgeDist"
      ]
    },
    {
      "page": "alkIndivAge",
      "title": "Use an age-length key to assign age to individuals in the unaged sample.",
      "topics": [
        "alkIndivAge"
      ]
    },
    {
      "page": "alkMeanVar",
      "title": "Mean Values-at-age from an age-length key",
      "topics": [
        "alkMeanVar"
      ]
    },
    {
      "page": "alkPlot",
      "title": "Plots to visualize age-length keys.",
      "topics": [
        "alkPlot"
      ]
    },
    {
      "page": "binCI",
      "title": "Confidence intervals for binomial probability of success.",
      "topics": [
        "binCI"
      ]
    },
    {
      "page": "BluegillJL",
      "title": "Capture histories (2 samples) of Bluegill from Jewett Lake, MI.",
      "concept": [
        "Abundance",
        "Capture History",
        "Capture-Recapture",
        "Mark-Recapture",
        "Petersen",
        "Population Size"
      ],
      "topics": [
        "BluegillJL"
      ]
    },
    {
      "page": "BrookTroutTH",
      "title": "Catch-at-age for Tobin Harbor, Isle Royale Brook Trout.",
      "concept": [
        "Catch Curve",
        "Mortality"
      ],
      "topics": [
        "BrookTroutTH"
      ]
    },
    {
      "page": "capFirst",
      "title": "Capitalizes the first letter of first or all words in a string.",
      "topics": [
        "capFirst"
      ]
    },
    {
      "page": "capHistConvert",
      "title": "Convert between capture history data.frame formats.",
      "topics": [
        "capHistConvert"
      ]
    },
    {
      "page": "capHistSum",
      "title": "Summarize capture histories in individual fish format.",
      "topics": [
        "capHistSum",
        "is.CapHist",
        "plot.CapHist"
      ]
    },
    {
      "page": "catchCurve",
      "title": "Mortality estimates from the descending limb of a catch curve.",
      "topics": [
        "anova.catchCurve",
        "catchCurve",
        "catchCurve.default",
        "catchCurve.formula",
        "coef.catchCurve",
        "confint.catchCurve",
        "plot.catchCurve",
        "rSquared.catchCurve",
        "summary.catchCurve"
      ]
    },
    {
      "page": "chapmanRobson",
      "title": "Computes Chapman-Robson estimates of S and Z.",
      "topics": [
        "chapmanRobson",
        "chapmanRobson.default",
        "chapmanRobson.formula",
        "coef.chapmanRobson",
        "confint.chapmanRobson",
        "plot.chapmanRobson",
        "summary.chapmanRobson"
      ]
    },
    {
      "page": "ChinookArg",
      "title": "Lengths and weights for Chinook Salmon from three locations in Argentina.",
      "concept": [
        "Weight-Length"
      ],
      "topics": [
        "ChinookArg"
      ]
    },
    {
      "page": "CodNorwegian",
      "title": "Stock and recruitment data for Norwegian cod, 1937-1960.",
      "concept": [
        "Recruitment",
        "Stock-Recruit"
      ],
      "topics": [
        "CodNorwegian"
      ]
    },
    {
      "page": "col2rgbt",
      "title": "Converts an R color to RGB (red/green/blue) including a transparency (alpha channel).",
      "topics": [
        "col2rgbt"
      ]
    },
    {
      "page": "boot",
      "title": "Associated S3 methods for bootstrap results from car::Boot.",
      "topics": [
        "boot",
        "confint.boot",
        "hist.boot",
        "htest.boot",
        "plot.boot",
        "predict.boot"
      ]
    },
    {
      "page": "CutthroatAL",
      "title": "Capture histories (9 samples) of Cutthroat Trout from Auke Lake.",
      "concept": [
        "Abundance",
        "Capture History",
        "Capture-Recapture",
        "Jolly-Seber",
        "Mark-Recapture",
        "Population Size"
      ],
      "topics": [
        "CutthroatAL"
      ]
    },
    {
      "page": "depletion",
      "title": "Computes the Leslie or DeLury population estimate from catch and effort data.",
      "topics": [
        "anova.depletion",
        "coef.depletion",
        "confint.depletion",
        "depletion",
        "depletion.default",
        "depletion.formula",
        "plot.depletion",
        "rSquared.depletion",
        "summary.depletion"
      ]
    },
    {
      "page": "dunnTest",
      "title": "Dunn's Kruskal-Wallis Multiple Comparisons.",
      "topics": [
        "dunnTest",
        "dunnTest.default",
        "dunnTest.formula",
        "print.dunnTest"
      ]
    },
    {
      "page": "Ecoli",
      "title": "Population growth of Escherichia coli.",
      "concept": [
        "Nonlinear Model",
        "Other"
      ],
      "topics": [
        "Ecoli"
      ]
    },
    {
      "page": "expandCounts",
      "title": "Repeat individual fish data (including lengths) from tallied counts.",
      "topics": [
        "expandCounts"
      ]
    },
    {
      "page": "expandLenFreq",
      "title": "Expands a length frequency based on a subsample.",
      "topics": [
        "expandLenFreq"
      ]
    },
    {
      "page": "extraTests",
      "title": "Likelihood ratio and extra sum-of-squares tests.",
      "topics": [
        "extraSS",
        "extraTests",
        "lrt",
        "print.extraTest"
      ]
    },
    {
      "page": "fact2num",
      "title": "Converts \"numeric\" factor levels to numeric values.",
      "topics": [
        "fact2num"
      ]
    },
    {
      "page": "findGrowthStarts",
      "title": "Find reasonable starting values for common fish growth functions.",
      "topics": [
        "findGrowthStarts"
      ]
    },
    {
      "page": "fishR",
      "title": "Opens web pages associated with the fishR website.",
      "topics": [
        "fishR"
      ]
    },
    {
      "page": "FSA-defunct",
      "title": "DEFUNCT functions.",
      "topics": [
        "bootCase",
        "chooseColors",
        "compIntercepts",
        "compSlopes",
        "diags",
        "filterD",
        "fitPlot",
        "FSA-defunct",
        "fsaNews",
        "hoCoef",
        "mapvalues",
        "plotBinResp",
        "residPlot",
        "Schnute",
        "Subset"
      ]
    },
    {
      "page": "geomean",
      "title": "Calculates the geometric mean or geometric standard deviation.",
      "topics": [
        "geomean",
        "geosd"
      ]
    },
    {
      "page": "GrowthData1",
      "title": "Hypothetical growth data for testing",
      "concept": [
        "Growth",
        "von Bertalanffy"
      ],
      "topics": [
        "GrowthData1"
      ]
    },
    {
      "page": "GrowthData2",
      "title": "Hypothetical growth data for testing seasonal age models.",
      "concept": [
        "Growth",
        "von Bertalanffy"
      ],
      "topics": [
        "GrowthData2"
      ]
    },
    {
      "page": "GrowthData3",
      "title": "Hypothetical growth data for testing",
      "concept": [
        "Growth",
        "von Bertalanffy"
      ],
      "topics": [
        "GrowthData3"
      ]
    },
    {
      "page": "growthModels",
      "title": "DEPRECATED (as of v0.10.0). Creates a function for a specific parameterization of the von Bertalanffy, Gompertz, Richards, and logistic growth functions.",
      "topics": [
        "GompertzFuns",
        "growthFunShow",
        "growthModels",
        "logisticFuns",
        "RichardsFuns",
        "vbFuns"
      ]
    },
    {
      "page": "headtail",
      "title": "Shows rows from the head and tail of a data frame or matrix.",
      "topics": [
        "headtail"
      ]
    },
    {
      "page": "hist.formula",
      "title": "Creates separate histograms by levels.",
      "topics": [
        "hist.formula"
      ]
    },
    {
      "page": "histFromSum",
      "title": "Create a histogram from a frequency table.",
      "topics": [
        "histFromSum",
        "histFromSum.default",
        "histFromSum.formula",
        "histFromSum.table"
      ]
    },
    {
      "page": "hyperCI",
      "title": "Confidence interval for population size (N) in hypergeometric distribution.",
      "topics": [
        "hyperCI"
      ]
    },
    {
      "page": "is.odd",
      "title": "Determine if a number is odd or even.",
      "topics": [
        "is.even",
        "is.odd"
      ]
    },
    {
      "page": "mrOpen",
      "title": "Jolly-Seber analysis from multiple mark-recapture events from an open population.",
      "topics": [
        "confint.mrOpen",
        "jolly",
        "mrOpen",
        "summary.mrOpen"
      ]
    },
    {
      "page": "knitUtil",
      "title": "Specific utilities for use in a knitr document.",
      "topics": [
        "kCounts",
        "kPvalue",
        "purl2",
        "reproInfo"
      ]
    },
    {
      "page": "ksTest",
      "title": "Kolmogorov-Smirnov Tests.",
      "topics": [
        "ksTest",
        "ksTest.default",
        "ksTest.formula"
      ]
    },
    {
      "page": "lagratio",
      "title": "Ratio of lagged observations.",
      "topics": [
        "lagratio"
      ]
    },
    {
      "page": "lencat",
      "title": "Constructs length class/category variable.",
      "topics": [
        "lencat",
        "lencat.default",
        "lencat.formula"
      ]
    },
    {
      "page": "logbtcf",
      "title": "Constructs the correction-factor used when back-transforming log-transformed values.",
      "topics": [
        "logbtcf"
      ]
    },
    {
      "page": "lwCompPreds",
      "title": "Constructs plots of predicted weights at given lengths among different groups.",
      "topics": [
        "lwCompPreds"
      ]
    },
    {
      "page": "makeGrowthFun",
      "title": "Creates a function for a specific parameterization of the von Bertalanffy and other common growth functions.",
      "topics": [
        "makeGrowthFun"
      ]
    },
    {
      "page": "Mirex",
      "title": "Mirex concentration, weight, capture year, and species of Lake Ontario salmon.",
      "concept": [
        "Linear Models",
        "Other"
      ],
      "topics": [
        "Mirex"
      ]
    },
    {
      "page": "metaM",
      "title": "Estimate natural mortality from a variety of empirical methods.",
      "topics": [
        "metaM",
        "Mmethods"
      ]
    },
    {
      "page": "mrClosed",
      "title": "Estimate initial population size for single or multiple census mark-recapture data.",
      "topics": [
        "confint.mrClosed1",
        "confint.mrClosed2",
        "mrClosed",
        "plot.mrClosed2",
        "summary.mrClosed1",
        "summary.mrClosed2"
      ]
    },
    {
      "page": "nlsBoot",
      "title": "Associated S3 methods for nlsBoot from nlstools.",
      "topics": [
        "confint.nlsBoot",
        "htest",
        "htest.nlsBoot",
        "nlsBoot",
        "predict.nlsBoot"
      ]
    },
    {
      "page": "nlsTracePlot",
      "title": "Adds model fits from nls iterations to active plot.",
      "topics": [
        "nlsTracePlot"
      ]
    },
    {
      "page": "peek",
      "title": "Peek into (show a subset of) a data frame or matrix.",
      "topics": [
        "peek"
      ]
    },
    {
      "page": "perc",
      "title": "Computes the percentage of values in a vector less than or greater than (and equal to) some value.",
      "topics": [
        "perc"
      ]
    },
    {
      "page": "PikeNY",
      "title": "Summarized multiple mark-recapture data for all Northern Pike from Buckhorn Marsh, NY.",
      "concept": [
        "Abundance",
        "Capture-Recapture",
        "Mark-Recapture",
        "Population Size",
        "Schnabel"
      ],
      "topics": [
        "PikeNY"
      ]
    },
    {
      "page": "PikeNYPartial1",
      "title": "Capture histories (4 samples), in capture history format, of a subset of Northern Pike from Buckhorn Marsh, NY.",
      "concept": [
        "Abundance",
        "Capture History",
        "Capture-Recapture",
        "Mark-Recapture",
        "Population Size",
        "Schnabel"
      ],
      "topics": [
        "PikeNYPartial1"
      ]
    },
    {
      "page": "plotAB",
      "title": "Construct traditional (Campana-like) age-bias plots.",
      "topics": [
        "plotAB"
      ]
    },
    {
      "page": "poiCI",
      "title": "Confidence interval for Poisson counts.",
      "topics": [
        "poiCI"
      ]
    },
    {
      "page": "psdAdd",
      "title": "Creates a vector of Gabelhouse lengths for each species in an entire data frame.",
      "topics": [
        "psdAdd",
        "psdAdd.default",
        "psdAdd.formula"
      ]
    },
    {
      "page": "psdCalc",
      "title": "Convenience function for calculating PSD-X and PSD X-Y values.",
      "topics": [
        "psdCalc"
      ]
    },
    {
      "page": "psdCI",
      "title": "Compute confidence intervals for PSD-X and PSD X-Y values.",
      "topics": [
        "psdCI"
      ]
    },
    {
      "page": "PSDlit",
      "title": "Gabelhouse five-cell length categories for various species.",
      "concept": [
        "PSD",
        "Size Structure"
      ],
      "topics": [
        "PSDlit"
      ]
    },
    {
      "page": "psdPlot",
      "title": "Length-frequency histogram with Gabelhouse lengths highlighted.",
      "topics": [
        "psdPlot"
      ]
    },
    {
      "page": "psdVal",
      "title": "Finds Gabelhouse lengths (for PSD calculations) for a species.",
      "topics": [
        "psdVal"
      ]
    },
    {
      "page": "PSDWRtest",
      "title": "Hypothetical weight-length data for testing PSD and relative weight functions",
      "concept": [
        "Condition",
        "PSD",
        "Relative Weight",
        "Size Structure",
        "Standard Weight"
      ],
      "topics": [
        "PSDWRtest"
      ]
    },
    {
      "page": "rcumsum",
      "title": "Computes the prior to or reverse cumulative sum of a vector.",
      "topics": [
        "pcumsum",
        "rcumsum"
      ]
    },
    {
      "page": "removal",
      "title": "Population estimates for k-, 3-, or 2-pass removal data.",
      "topics": [
        "coef.removal",
        "confint.removal",
        "removal",
        "removal.default",
        "removal.formula",
        "summary.removal"
      ]
    },
    {
      "page": "repeatedRows2Keep",
      "title": "Find non-repeated consecutive rows in a data.frame.",
      "topics": [
        "repeatedRows2Keep"
      ]
    },
    {
      "page": "rSquared",
      "title": "Extract the coefficient of determination from a linear model object.",
      "topics": [
        "rSquared",
        "rSquared.default",
        "rSquared.lm"
      ]
    },
    {
      "page": "se",
      "title": "Computes standard error of the mean.",
      "topics": [
        "se"
      ]
    },
    {
      "page": "showGrowthFun",
      "title": "Creates a string or an expression for a specific growth function.",
      "topics": [
        "showGrowthFun"
      ]
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    {
      "page": "SMBassLS",
      "title": "Catch-effort data for Little Silver Lake (Ont) Smallmouth Bass.",
      "concept": [
        "Abundance",
        "Catchability",
        "DeLury",
        "Depletion",
        "Leslie",
        "Population Size"
      ],
      "topics": [
        "SMBassLS"
      ]
    },
    {
      "page": "SMBassWB",
      "title": "Growth increment data for West Bearskin Lake, MN, Smallmouth Bass.",
      "concept": [
        "Back-Calculation",
        "Growth",
        "Increment Analysis",
        "Weisberg LGM"
      ],
      "topics": [
        "SMBassWB"
      ]
    },
    {
      "page": "SpotVA1",
      "title": "Age and length of spot.",
      "concept": [
        "Growth",
        "von Bertalanffy"
      ],
      "topics": [
        "SpotVA1"
      ]
    },
    {
      "page": "srFuns",
      "title": "Creates a function for a specific parameterization of a common stock-recruitment function .",
      "topics": [
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        "srFunShow"
      ]
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    {
      "page": "srStarts",
      "title": "Finds reasonable starting values for parameters in specific parameterizations of common stock-recruitment models.",
      "topics": [
        "srStarts"
      ]
    },
    {
      "page": "Summarize",
      "title": "Summary statistics for a numeric variable.",
      "topics": [
        "Summarize",
        "Summarize.default",
        "Summarize.formula"
      ]
    },
    {
      "page": "sumTable",
      "title": "Creates a one- or two-way table of summary statistics.",
      "topics": [
        "sumTable",
        "sumTable.formula"
      ]
    },
    {
      "page": "tictactoe",
      "title": "Construct a base tic-tac-toe plot for presenting predator-prey PSD values.",
      "topics": [
        "tictactoe"
      ]
    },
    {
      "page": "validn",
      "title": "Finds the number of valid (non-NA) values in a vector.",
      "topics": [
        "validn"
      ]
    },
    {
      "page": "vbStarts",
      "title": "Find reasonable starting values for a von Bertalanffy growth function.",
      "topics": [
        "vbStarts"
      ]
    },
    {
      "page": "WhitefishLC",
      "title": "Assigned ages from two readers on three structures for Lake Whitefish from Lake Champlain.",
      "concept": [
        "Age Bias",
        "Age Comparisons",
        "Age Precision",
        "Ageing Error"
      ],
      "topics": [
        "WhitefishLC"
      ]
    },
    {
      "page": "WR79",
      "title": "Ages and lengths for a hypothetical sample from Westerheim and Ricker (1979).",
      "concept": [
        "Age-Length Key"
      ],
      "topics": [
        "WR79"
      ]
    },
    {
      "page": "wrAdd",
      "title": "Computes a vector of relative weights specific to a species in an entire data frame.",
      "topics": [
        "wrAdd",
        "wrAdd.default",
        "wrAdd.formula"
      ]
    },
    {
      "page": "WSlit",
      "title": "All known standard weight equations.",
      "concept": [
        "Condition",
        "Relative Weight",
        "Standard Weight"
      ],
      "topics": [
        "WSlit"
      ]
    },
    {
      "page": "wsVal",
      "title": "Finds standard weight equation coefficients for a particular species.",
      "topics": [
        "wsVal"
      ]
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