NEWS

FSAdata 0.4.1 (2023-08-24)

Fixed FSAdata-package \alias problem using the "manual approach" (i.e., adding a specific @aliases FSAdata-package line to FSAdata.R) suggested in an e-mail from Kurt Hornik on 19-Aug-2023.
Changed all http://derekogle.com/ URLs to https://derekogle.com/.
Updated CITATION file to meet CRAN requirements.

FSAdata 0.4.0 (2022-12-11)

Changed my (DHO) email in DESCRIPTION.
Added Code of Conduct
Updated README.md
Updated R-CMD-check.yaml GitHub action to v2 (this addresses the issue with the action on Ubuntu-dev).
Added pkgdown site.
- Added Suggests for dplyr, fishmethods, FSA, knitr, pkgdown, readxl, and rmarkdown (related to creating website).
- Added pkgdown.yaml GitHub action.
- Added "CSV file" links for all datasets' documentation files.
SpotVA2: Modified documentation to address #8

FSAdata 0.3.9 (2022-02-13)

Last version maintained by Derek Ogle. Transferring to fishR Core Team for next version.
Removed Travis-CI.
Added GitHub Actions for CI/CD (used usethis::use_github_action_check_standard())
Renamed default repo from master to main (see this).

FSAdata 0.3.8 (2019-05-18)

Corrected misuse of \concept in Rd files per CRAN request.

FSAdata 0.3.7 (2019-03-24)

Added Encoding: UTF-8 to DESCRIPTION.
PygmyWFBC: Modified. Added the 2000 data (thought they were there but they were not).
RBTroutKenai: Modified. Corrected error (thanks to Robert Black).

FSAdata 0.3.6 (2017-03-10)

BluegillIL: Modified. Changed names of variables.

FSAdata 0.3.5 (2016-12-13)

.onAttach(): Modified. Streamlined package startup message.
Mosquitofish: Fixed small typos in documentation.

FSAdata 0.3.4 (2016-08-23)

BluegillIL: Added.
Cabezon: Fixed small typo in documentation.
RBTroutKenai: Fixed small typo in documentation.
RuffeSLRH92: Added more specificity to documentation.
WalleyeErie2: Fixed small typo in documentation.
WalleyeML: Fixed small typo in documentation.
YERockfish: Fixed small typo in documentation.

FSAdata 0.3.3 (2016-07-18)

Started using ROxygen v5.0.0.
Bonito: Added.
Mosquitofish: Added.
RWhitefishAI: Modified. Fixed typo in scientific names and length units. Fixes #3. Thanks to Peter Mous.
RWhitefishIR: Modified. Fixed typo in scientific names and length units. Fixes #3. Thanks to Peter Mous.
SnapperHG: Modified. Fixed typo in documentation.
StripedBass2: Modified. Fixed typo in length units. Fixes #4. Thanks to Peter Mous.
YPerchTL: Modified. Minor update to documentation.
YPerchSB1: Modified. Fixed typo in documentation.

FSAdata 0.3.2 (2015-10-22)

Fixed LaTeX quotes in DESCRIPTION file.
Removed all \href{}{} and \url{} codes to websites that I don't control. The addresses are now "naked" such that the user will need to copy-and-paste them into a browser to view the web page rather than clicking on a hyper link. Hopefully this will eliminate problems with R CMD CHECK.
Added notes to all files that were used in IFAR.

FSAdata 0.3.1

DATE: 21-Oct-15
Removed Imports for utils due to changes in FSAdata described below.
Lots of editorial changes to help pages to make it the datalist vignette in FSA work better an to make the documentation more consistent.
Changed all files in data-raw to CSV files.
Added and exported the FSAdataTopics object.
AfricanRivers: Added a topic to help documentation.
BGHRfish: Added.
BGHRsample: Added.
BlackDrum2001: Added.
Casselman1990: Added a topic to help documentation.
CCatfishNB: Added.
CreekChub: Added.
CreelMN: Added a topic to help documentation.
CutthroatALf: Modified. Removed href as it seemed inconsistent.
FSAdata: Modified. Fixed link to FSA package. Removed importFrom for read.table() from utils.
Ghats: Added a topic to help documentation.
LakeTroutEggs: Added a topic to help documentation.
PikeHL: Modified. Removed href as it seemed inconsistent.
ShadCR: Added.
SiscowetMI2004: Added.
StrugeonBG: Added.
WalleyeWad: Added.
WalleyeWyrlng: Added.
WhitefishLS: Added a topic to help documentation.

FSAdata 0.3.0 (2015-10-06)

Released to CRAN

FSAdata 0.2.2

DATE: Oct15
Converted all .txt files to .Rda files. Original .txt files are in the data-raw directory which was added to .Rbuildignore.

FSAdata 0.2.1

DATE: Sep15
Updated README.md and DESCRIPTION to reflect the new websites.

FSAdata 0.2.0

DATE: Aug15
Added importFrom for utils.
BluegilLM: Added. Moved from FSA.
CutthroatALF.R: Modified. Changed to use utils::read.table() rather than read.table().
WalleyeErie2: Added.
WalleyeML: Added.

FSAdata 0.1.9

DATE: Jul15
Removed several URLs that either did not work consistently or have been moved. Fixed several others.
Fixed title in DESCRIPTION.
Fixed CITATION.
Removed Suggests for FSA.
Added Travis CI.

FSAdata 0.1.8

DATE: Apr14
Updated DESCRIPTION file (following this -- http://r-pkgs.had.co.nz/description.html). Also added LazyData: true.
Pathfinder: Added.
YPerchSB: Modified. Corrected bug with data.

FSAdata 0.1.7

DATE: Aug14
Modified two examples to use interactive() because of use of FSA package.
BrookTroutNEWP1: Added. Use as an example to test removal() in the FSA package.
DarterMahon: Added.
LobsterPEI: Added. Used as an example to test depletion() in the FSA package.
ShrimpGuam: Added.
SnapperHG1: Added.

FSAdata 0.1.6

DATE: Jul14
BullTroutRML1: Modified. Updated the source reference.
BullTroutRML2: Modified. Updated the source reference.
CutthroatALf: Added.
RuffeSLRH92: Modified. Changed the species variable to indiv.
SunfishIn: Modified. Updated example after changes to mrClosed() in FSA.
WalleyeConsumption: Modified. Updated the source reference.

FSAdata 0.1.5

DATE: Jun14
Changed to using github and compiling under R 3.1.0.
Moved FSA to a "suggests" rather than "depends".
Made topic sections consistent, added concept fields, and cleaned up titles in the help files so that help.search() worked better.
Cleaned up help files (consistent spacing and labeling).
FSAdata.R: Modified. Updated help.search() hints to include the FSA package.
AlewifeLH: Modified. Changed example to use xtabs(). Cleaned up help file. Added link to reference.
BluegillWS: Deleted. Moved to FSAWs.
BluefishAge: Modified. Corrected reference. Cleaned up help file.
Cabezon: Modified. Changed example to use xtabs(). Cleaned up help file.
ChinookArg: Removed (moved to FSA).
CreelMN: Modified. Used a dontrun{} in the examples to remove dependency on FSA. Changed example to use xtabs(). Cleaned up help file.
Croaker1: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
Croaker2: Modified. Corrected reference. Cleaned up help file.
GreensCreekMine: Added.
Herman: Modified. Modified a link to the article in the help file. Cleaned up help file.
JobfishSIO: Modified. Added a link to the article in the help file. Cleaned up help file.
LakeTroutALTER: Modified. Corrected reference. Cleaned up help file.
Morwong1: Modified. Changed example to use xtabs(). Cleaned up help file.
Morwong2: Modified. Changed example to use xtabs(). Cleaned up help file.
MulletBS: Modified. Changed example to use xtabs(). Cleaned up help file.
MuskieSLR: Modified. Changed example to use xtabs(). Cleaned up help file.
PikeHL: Modified. Added a note. Cleaned up help file.
RuffeSLRH92: Modified. Changed example to use xtabs(). Cleaned up help file.
RWhitefishAI: Added.
RWhitefishIR: Added.
SalmonidsMCCA: Added.
SardineLK: Modified. Corrected reference. Cleaned up help file.
SculpinALTER: Modified. Corrected reference. Cleaned up help file.
SnapperHG1: Added.
SpottedSucker1: Added.
SpotVA2: Modified. Corrected reference. Cleaned up help file.
StripedBass1: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
StripedBass2: Modified. Corrected reference. Cleaned up help file.
StripedBass3: Modified. Corrected reference. Cleaned up help file.
StripedBass4: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
StripedBass5: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
StripedBass6: Modified. Corrected reference. Changed example to use xtabs(). Cleaned up help file.
SunfishIN: Modified. Corrected a data entry error. Added test example. Cleaned up help file.
WalleyeMN06a: Modified. Added link to reference. Cleaned up help file.
WalleyeMN06b: Modified. Added link to reference. Cleaned up help file.
WalleyePL: Added.
WalleyePL1: Deleted. Combined to form WalleyePL.
WalleyePL2: Deleted. Combined to form WalleyePL.
WalleyePL3: Deleted. Combined to form WalleyePL.
WalleyePL4: Deleted. Combined to form WalleyePL.
WalleyeWS: Deleted. Moved to FSAWs.
WhitefishLS: Modified. Corrected reference. Cleaned up help file.
YPerchTL: Modified. Corrected reference. Cleaned up help file.

FSAdata 0.1.4

DATE: Apr14
Changed R dependency to >3.0.0 (because FSA package has that dependency).
Removed dependency on gdata (no longer needed when RuffeWS was moved to FSA).
Slight modifications to RD files (capitalized all common names per new AFS "rule", formatted around variables and topics to make easier to edit.)
BluefishAge: Modified. Removed link to original source (caused problems at check).
CrappieARMS: Modified.
Croaker1: Modified. Removed link to original source (caused problems at check).
Croaker2: Modified. Removed link to original source (caused problems at check).
Deckeretal1999: Added.
HumpbackWFCR: Added.
Menhaden1: Added.
StripedBass1: Added (from FSA).
StripedBass2: Modified. Removed link to original source (caused problems at check).
StripedBass4: Modified. Removed link to original source (caused problems at check).
StripedBass5: Modified. Removed link to original source (caused problems at check).
StripedBass6: Modified. Removed link to original source (caused problems at check).
WalleyeKS: Added.

FSAdata 0.1.3

DATE: Jun13
Switched to using roxygen2 to create help files.
Added a Depends on FSA (note that FSA no longer depends on FSAdata).
Modified depends to >R2.14.0 to match FSA (which this depens on).
Moved the following data files to FSA: BluegillJL, BluegillLM, BrookTroutTH, CodNorwegian, CutthroatAL, Ecoli, KS2D_NR, LMBassWs, Mirex, PikeNY, PikeNYPartial1, RSDlit, RuffeWs, SMBassLS, SMBassWB, SpotVA1, StripedBass1, VBGMlit, WalleyeGerowLW, WR79, and WSlit, which eliminated the dependency of FSA on FSAdata.
.onAttach(): added, was .onLoad()` with a slight modification to avoid possible warnings on RCMD Check.
.onLoad(): deleted, changed to .onAttach().
CreelMN: modified examples in help file to reflect dependency on FSA.
InchLake2: modified by changing "Largemouth Bass (<8)" to "Largemouth Bass" and "Yellow Perch (<5)" to "Yellow Perch". Also removed the sex and mat variables.
PikeHL: modified by adding URL to the source report.

FSAdata 0.1.2

DATE: 25Nov12
Deleted Depends on utils package (wasn't needed).
Switched to using Project development in RStudio.
Switched to using semantic versioning for version numbers (which means that the hyphen before the last number in the version is replaced with a period).
Ecoli: Added (from NCStats).
Mirex: Added (from NCStats).

FSAdata 0.1-1

DATE: 20Nov12
Added a namespace (for 2.14.0 compatability)
Switched to compiling under R version 2.13.1 (32-bit).
Changed license specification from "GPL version 2 or newer" to "GPL (>= 2)" to avoid warning on check.
.onLoad(): Modified. Moved the startup message into packageStartupMessage() in hopes of eliminating the warning when checking the package.
AnchovetaChile: Modified. Updated to the actual data from the author.
Cabezon: Added. This is the actual data from the author.
ChinookArg: Added.
CreelMN: Added.
KS2D_NR: Added from NCStats.
SardineChile: Added. This is the actual data from the author.
YERockfish: Added. This is the actual data from the author.

FSAdata 0.1-0

DATE: 19Aug11
Moved to compiling under 2.13.0 (32 bit)
Changed dependency to >2.11.1
Modified description file to show my e-mail address.
SquareLakePopn: removed. Moved to NCStats package.
VBGMlit: modified. Changed "to" variable to "t0".

FSAdata 0.0-9

DATE: 31Jan11
added examples to each rd file. The examples show the structure and first few rows of each data file. In addition, many provide a simple plot or table of the raw data. The idea was to provide the user with a quick method to see what the data looked like.
.First.lib(): modified -- Changed to include version number of loaded version.
BassFL: modified -- corrected misspelling of SantaFe in first few rows.
BSkateGB: added -- used for stock-recruitment analysis.
BrookTroutNC: added -- used for stock-recruitment analysis.
DarterOnt: added -- used for growth modeling.
FSAdata-package.Rd: modified -- added directions on how to use help.search() to find data frames that can be used for specific concepts/topics.
KingCrabAK: added -- used for stock-recruitment analysis.
SimonsonLyons: added -- used for removal estimates.
SLampreyGL: added -- used for stock-recruit relationships.
VendaceLP2: added -- used for stock-recruit relationships.
YPerchCB1: added -- used for catch-curve analysis.
YPerchCB2: modified -- added a year-class variable and changed the recruit variable to recruits (notice the s).

FSAdata 0.0-8

DATE: 31Jul10
moved to compiling under 2.11.1.
BassFL: added -- used for catch curve analysis.
BrookTroutOnt: added -- used for Petersen mark-recapture analysis.
ChinookKR: added -- used for stock-recruitment.
Hake: added -- used for stock-recruitment.
HerringBWE: added -- used for stock-recruitment.
LakeTroutGIS: modified -- changed "recruit" variable to "recruits".
PSalmonAK: added -- used for stock-recruitment analysis.
RedDrum: added -- used for von Bertalanffy models (including double von B).
SockeyeSR: added -- used for stock-recruitment.
TPrawnsEG: added -- used for stock-recruitment.
WalleyeMN06a: added -- used for catch curve analysis.
WalleyeMN06b: added -- used for multiple closed mark-recapture analysis.
WhiteGrunt1: added -- used for catch curve analysis.
WhiteGrunt2: added -- used for von Bertalanffy models.

FSAdata 0.0-7

DATE: 5Jun10
AHerringChile: added -- used as an example for seasonal von Bertalanffy models.
AnchovetaChile: added -- used as an example for seasonal von Bertalanffy models.
WAEConsumption: added -- used as an example for non-linear models.

FSAdata 0.0-6

DATE: 17Dec09
moved to compiling under 2.10.1.
updated FSAdata.rd
RBTroutKenai: added -- used for Fabens method example.

FSAdata 0.0-5

DATE: 1Apr09
added dependency to gdata for example in RuffeWs.
modified all .Rdata data files to be .txt data files.
changed to compiling under 2.7.0.
added CITATION file.
.First.lib: Added
BluegillIL1, LMBassIL1: deleted and replaced with InchLake.
InchLake1: Added -- replaces old BluegillIL1 and LMBassIL1 and includes 2008 data.
InchLake2: Added -- can be used for length weight and relative weight analyses.
MuskieWI06MR: Added -- can be used for Petersen mark-recapture analyses.
RuffeWs: Added -- can be used for standard and relative weight analyses.
WalleyeGerowLW: Added -- can be used for standard and relative weight analyses. Specifically used to test results of emp() function in FSA against Gerow's Excel Tool.

FSAdata 0.0-4

DATE: 15May08
moved to RForge.
BluegillLM1: Added -- can be used for length-weight analysis.
BrownTroutVC1: Added -- can be used for M/R by length-class.
RSDlit: Changed .E variables to .in and changed .m variables to .cm. This better reflects the units of measurement.
StripedBass2, StripedBass3: Added -- can be used for growth modeling and age-length key.
StipedBass4, StripedBass5, StripedBass6: Added -- can be used for age comparison (bias and precision) analyses.

FSAdata 0.0-3

DATE: unknown
changed to compiling under R 2.6.1.
redid nearly all RD files for (1) consistency, (2) to make LaTeX work, and (3) added concept and topics sections for search purposes.
BloaterLH: changed variable Year to year (note lower-case y).
BluegillWs: Added -- can be used to test the rlp() function in the FSA package.
BrkTrtTH: Changed name to BrookTroutTH.
BrookTroutNEWP: Added -- can be used for removal estimates.
BullTroutRML1: Added -- can be use for length-weight analysis.
BullTroutRML2: Added -- can be use for size-at-age growth modeling.
HardingLakeNP: changed name to PikeHL (consistent with other namings).
JonesStockwell: Added -- can be used for removal estimates.
LMBassWs: Added -- can be used to test the rlp() function in the FSA package.
LizardFish: changed name to Lizardfish (note lower-case f).
Muskie1: changed name to MuskieSLR.
PacFlounder: changed name to HalibutPAC.
PikeIL: Added -- can be used for depletion estimates.
SalmonAPD: Added -- can be used for depletion/removal estimates.
SardineKL: Added -- can be used for size-at-age growth modeling.
SockeyeKL: changed variable Year to year (note lower-case y).
TroutAPD: Added -- can be used for depletion/removal estimates.
WalleyeWs: Added -- can be used to test the rlp() function in the FSA package.
WSlit: added information for bridgelip and largescale suckers.

FSAdata 0.0-2

DATE: unknown
added BullTroutTC -- can be used for catch curve mortality estimation.
added FlatheadATL -- can be used for catch curve mortality estimation.
added SunfishLP -- can be used for catch curve mortality estimation.
added WalleyePS -- can be used for age bias and precision estimation.